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Structured Review

Accelrys ds visualize accelrys v 2.5 software
Ds Visualize Accelrys V 2.5 Software, supplied by Accelrys, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ds+visualizer+2%2E5/ds+visualize+accelrys+v+2+5+software/10__1007_slash_s10934___021___01185___y-75-8-10
Average 90 stars, based on 1 article reviews
ds visualize accelrys v 2.5 software - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

Mutagenesis:

Article Title: Structure-based design, synthesis and biological testing of etoposide analog epipodophyllotoxin–N-mustard hybrid compounds designed to covalently bind to topoisomerase II and DNA
Article Snippet: Etoposide docked back into its protein–DNA structure with a heavy atom rmsd distance of 0.48 Å, compared to the X-ray structure.8 Values of 2.0 Å or less in the extensive GOLD test set are considered to be good.51 The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).


Article Title: Atypical Reactive Center Kunitz-Type Inhibitor from the Sea Anemone Heteractis crispa
Article Snippet: Visualizations were performed using DS Visualizer 2.5 Accelrys ® software.

Article Title: Structure-based design, synthesis and biological testing of piperazine-linked bis-epipodophyllotoxin etoposide analogs
Article Snippet: 39 The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Article Title: Design, synthesis and biological evaluation of a novel series of bisintercalating DNA-binding piperazine-linked bisanthrapyrazole compounds as anticancer agents
Article Snippet: 46 The graphic was prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Article Title: Structure-based design, synthesis and biological testing of piperazine-linked bis-epipodophyllotoxin etoposide analogs
Article Snippet: Etoposide docked without constraints back into its topoisomerase IIβ-DNA structure with a heavy atom r.m.s. distance of 0.48 Å,14 compared to the X-ray structuredetermined pose.5 Values of 2.0 Å or less in the extensive GOLD test set are considered to be good.39 The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Article Title: Tryptophan Rotamer Distribution Revealed for the Alpha-Helix in Tear Lipocalin by Site Directed Tryptophan Fluorescence
Article Snippet: The mutation to introduce Trp at position 133 and rotamer assignment were generated from the PDB file (3EYC) with DS Visualizer 2.5 (Accelrys Inc.) A large body of evidence indicates that multi-exponential fluorescence decays of single Trp residues in proteins and conformationally restricted peptides, generally, result from ground-state heterogeneity, i.e. rotamers.

Article Title: The anticancer multi-kinase inhibitor dovitinib also targets topoisomerase I and topoisomerase II
Article Snippet: The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Introduce:

Article Title: Structure-based design, synthesis and biological testing of etoposide analog epipodophyllotoxin–N-mustard hybrid compounds designed to covalently bind to topoisomerase II and DNA
Article Snippet: Etoposide docked back into its protein–DNA structure with a heavy atom rmsd distance of 0.48 Å, compared to the X-ray structure.8 Values of 2.0 Å or less in the extensive GOLD test set are considered to be good.51 The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).


Article Title: Atypical Reactive Center Kunitz-Type Inhibitor from the Sea Anemone Heteractis crispa
Article Snippet: Visualizations were performed using DS Visualizer 2.5 Accelrys ® software.

Article Title: Structure-based design, synthesis and biological testing of piperazine-linked bis-epipodophyllotoxin etoposide analogs
Article Snippet: 39 The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Article Title: Design, synthesis and biological evaluation of a novel series of bisintercalating DNA-binding piperazine-linked bisanthrapyrazole compounds as anticancer agents
Article Snippet: 46 The graphic was prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Article Title: Structure-based design, synthesis and biological testing of piperazine-linked bis-epipodophyllotoxin etoposide analogs
Article Snippet: Etoposide docked without constraints back into its topoisomerase IIβ-DNA structure with a heavy atom r.m.s. distance of 0.48 Å,14 compared to the X-ray structuredetermined pose.5 Values of 2.0 Å or less in the extensive GOLD test set are considered to be good.39 The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Article Title: Tryptophan Rotamer Distribution Revealed for the Alpha-Helix in Tear Lipocalin by Site Directed Tryptophan Fluorescence
Article Snippet: The mutation to introduce Trp at position 133 and rotamer assignment were generated from the PDB file (3EYC) with DS Visualizer 2.5 (Accelrys Inc.) A large body of evidence indicates that multi-exponential fluorescence decays of single Trp residues in proteins and conformationally restricted peptides, generally, result from ground-state heterogeneity, i.e. rotamers.

Article Title: The anticancer multi-kinase inhibitor dovitinib also targets topoisomerase I and topoisomerase II
Article Snippet: The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Generated:

Article Title: Structure-based design, synthesis and biological testing of etoposide analog epipodophyllotoxin–N-mustard hybrid compounds designed to covalently bind to topoisomerase II and DNA
Article Snippet: Etoposide docked back into its protein–DNA structure with a heavy atom rmsd distance of 0.48 Å, compared to the X-ray structure.8 Values of 2.0 Å or less in the extensive GOLD test set are considered to be good.51 The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).


Article Title: Atypical Reactive Center Kunitz-Type Inhibitor from the Sea Anemone Heteractis crispa
Article Snippet: Visualizations were performed using DS Visualizer 2.5 Accelrys ® software.

Article Title: Structure-based design, synthesis and biological testing of piperazine-linked bis-epipodophyllotoxin etoposide analogs
Article Snippet: 39 The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Article Title: Design, synthesis and biological evaluation of a novel series of bisintercalating DNA-binding piperazine-linked bisanthrapyrazole compounds as anticancer agents
Article Snippet: 46 The graphic was prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Article Title: Structure-based design, synthesis and biological testing of piperazine-linked bis-epipodophyllotoxin etoposide analogs
Article Snippet: Etoposide docked without constraints back into its topoisomerase IIβ-DNA structure with a heavy atom r.m.s. distance of 0.48 Å,14 compared to the X-ray structuredetermined pose.5 Values of 2.0 Å or less in the extensive GOLD test set are considered to be good.39 The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Article Title: Tryptophan Rotamer Distribution Revealed for the Alpha-Helix in Tear Lipocalin by Site Directed Tryptophan Fluorescence
Article Snippet: The mutation to introduce Trp at position 133 and rotamer assignment were generated from the PDB file (3EYC) with DS Visualizer 2.5 (Accelrys Inc.) A large body of evidence indicates that multi-exponential fluorescence decays of single Trp residues in proteins and conformationally restricted peptides, generally, result from ground-state heterogeneity, i.e. rotamers.

Article Title: The anticancer multi-kinase inhibitor dovitinib also targets topoisomerase I and topoisomerase II
Article Snippet: The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Fluorescence:

Article Title: Structure-based design, synthesis and biological testing of etoposide analog epipodophyllotoxin–N-mustard hybrid compounds designed to covalently bind to topoisomerase II and DNA
Article Snippet: Etoposide docked back into its protein–DNA structure with a heavy atom rmsd distance of 0.48 Å, compared to the X-ray structure.8 Values of 2.0 Å or less in the extensive GOLD test set are considered to be good.51 The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).


Article Title: Atypical Reactive Center Kunitz-Type Inhibitor from the Sea Anemone Heteractis crispa
Article Snippet: Visualizations were performed using DS Visualizer 2.5 Accelrys ® software.

Article Title: Structure-based design, synthesis and biological testing of piperazine-linked bis-epipodophyllotoxin etoposide analogs
Article Snippet: 39 The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Article Title: Design, synthesis and biological evaluation of a novel series of bisintercalating DNA-binding piperazine-linked bisanthrapyrazole compounds as anticancer agents
Article Snippet: 46 The graphic was prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Article Title: Structure-based design, synthesis and biological testing of piperazine-linked bis-epipodophyllotoxin etoposide analogs
Article Snippet: Etoposide docked without constraints back into its topoisomerase IIβ-DNA structure with a heavy atom r.m.s. distance of 0.48 Å,14 compared to the X-ray structuredetermined pose.5 Values of 2.0 Å or less in the extensive GOLD test set are considered to be good.39 The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).

Article Title: Tryptophan Rotamer Distribution Revealed for the Alpha-Helix in Tear Lipocalin by Site Directed Tryptophan Fluorescence
Article Snippet: The mutation to introduce Trp at position 133 and rotamer assignment were generated from the PDB file (3EYC) with DS Visualizer 2.5 (Accelrys Inc.) A large body of evidence indicates that multi-exponential fluorescence decays of single Trp residues in proteins and conformationally restricted peptides, generally, result from ground-state heterogeneity, i.e. rotamers.

Article Title: The anticancer multi-kinase inhibitor dovitinib also targets topoisomerase I and topoisomerase II
Article Snippet: The graphics were prepared with DS Visualizer 2.5 (Accelrys, San Diego, CA).



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